Sometimes below command may not work in Program Command shape.
> START C:\test\example\example.bat
No matter where the program or script is located, its runtime execution context is the Atom’s root directory. If your program or script contains relative file or directory references, you need to add a “cd” command within the program or script to reset the execution context: http://help.boomi.com/atomsphere/GUID-5923FF87-7F11-41D1-A3AB-11067D168F81.html
In this scenario the command entered should be like below:
> cmd /c C:\test\example\example.bat